Alignment of alleles: Chimpanzee (Pan troglodytes) IGHE

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Exon names are shown between parentheses on the first line.
The Cysteines involved in the IG CH1, CH2 and CH3 intrachain disulfide bridge are shown with a larger letter C in purple. The Cysteines involved in the H-L or H-H interchain disulfide bridge are shown with a larger letter C in black.
STOP-CODON is indicated by an asterisk.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                                    1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                     A   P   T   R   S   P   S   L   F   P   L   T   R   C   C 
  M15398  ,IGHE*01 (CH1)                          (G)CC CCC ACA CGG AGC CCA TCC CTC TTC CCC TTG ACC CGC TGC TGC

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 K   N   I   P   S   N       A   T   S   V   T   L   G   C   L   A   M   G   Y
  M15398  ,IGHE*01 (CH1)        AAA AAC ATT CCC TCC AAT ... GCC ACC TCC GTG ACG CTG GGC TGC CTG GCC ATG GGC TAC

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 F   P           E   P   V   M   V   T   W   D   A   G   S   L   N   G
  M15398  ,IGHE*01 (CH1)        TTC CCG ... ... GAG CCG GTG ATG GTG ACC TGG GAC GCA GGC TCC CTC AAC GGG ... ...

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         T   T   M   T   L   P   A   T   T   L   T   P   S
  M15398  ,IGHE*01 (CH1)        ... ... ACA ACT ATG ACC TTA CCA GCC ACC ACC CTC ACG CCC TCT ... ... ... ... ...

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 G   H   Y   A   T   I   S   L   L   T   V   S   G   A   W                   A
  M15398  ,IGHE*01 (CH1)        GGT CAC TAT GCC ACC ATC AGC TTG CTG ACC GTC TCG GGT GCG TGG ... ... ... ... GCC

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 K   Q   M   F   T   C   R   V   A   H   T   P   S   S   T   D   W   V   D   N 
  M15398  ,IGHE*01 (CH1)        AAG CAG ATG TTC ACC TGC CGT GTG GCA CAC ACT CCA TCG TCC ACA GAC TGG GTG GAC AAC


                                119 120 121 122
                                 K   T   F   S
  M15398  ,IGHE*01 (CH1)        AAA ACC TTC AGC G




                                            1.6 1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                             V   C   S   R   D   F   T   P   T   V   K   V   L   Q   S   S   C 
  M15398  ,IGHE*01 (CH2)                     TC TGC TCC AGG GAC TTC ACG CCC ACC GTG AAG GTC TTA CAG TCG TCC TGT

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 D   G   G   G   H   F       P   P   T   I   Q   L   L   C   L   V   S   G   Y
  M15398  ,IGHE*01 (CH2)        GAC GGC GGC GGG CAC TTC ... CCC CCG ACC ATC CAG CTC CTG TGC CTC GTC TCT GGG TAC

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 T   P           G   T   I   N   I   T   W   L   E   D   G   Q   V   M   D
  M15398  ,IGHE*01 (CH2)        ACC CCA ... ... GGG ACT ATC AAC ATC ACC TGG CTG GAG GAC GGG CAG GTC ATG GAC ...

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         V   D   L   S   T   A   S   A   T   Q   E   G
  M15398  ,IGHE*01 (CH2)        ... ... GTG GAC TTG TCC ACC GCC TCT GCC ACG CAG GAG GGT ... ... ... ... ... ...

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 E   L   A   S   T   Q   S   E   L   T   L   S   Q   K   H   W           L   S
  M15398  ,IGHE*01 (CH2)        GAG CTG GCC TCC ACA CAA AGC GAG CTC ACC CTC AGC CAG AAG CAC TGG ... ... CTG TCG

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 D   R   T   Y   T   C   Q   V   T   Y   Q                   G   G   T   F   E
  M15398  ,IGHE*01 (CH2)        GAC CGC ACC TAC ACC TGC CAG GTC ACC TAT CAA ... ... ... ... GGT GGC ACC TTT GAG


                                119 120 121 122 123 124 125
                                 D   S   T   K   K   C   A
  M15398  ,IGHE*01 (CH2)        GAC AGC ACC AAG AAG TGT GCA G




                                                1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                 D   S   N   P   R   G   V   S   A   Y   L   S   R   P   S   P
  M15398  ,IGHE*01 (CH3)                         AT TCC AAC CCG AGA GGG GTG AGC GCC TAC CTA AGC CGG CCC AGC CCG

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 F   D   L   F   I           R   K   S   P   T   I   T   C   L   V   V   D   L
  M15398  ,IGHE*01 (CH3)        TTC GAC CTG TTC ATC ... ... CGC AAG TCG CCC ACG ATC ACC TGT CTG GTG GTG GAC CTG

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 A   P   S   K   G   T   V   N   L   T   W   S   R   A   S   G   K   P   V
  M15398  ,IGHE*01 (CH3)        GCA CCC AGC AAG GGG ACC GTG AAC CTG ACC TGG TCC CGG GCC AGT GGG AAG CCT GTG ...

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                         N   H   S   T   R   K   Q   E   K   Q   R   N
  M15398  ,IGHE*01 (CH3)        ... ... AAC CAC TCC ACC AGA AAG CAG GAG AAG CAG CGC AAC ... ... ... ... ... ...

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 G   T   L   T   V   T   S   T   L   P   V   G   T   R   D   W           I   E
  M15398  ,IGHE*01 (CH3)        GGC ACG TTA ACC GTC ACG TCC ACC CTG CCG GTG GGC ACC CGA GAC TGG ... ... ATC GAG

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 G   E   T   Y   Q   C   R   V   T   H   P   H           L   P   R   A   L   V
  M15398  ,IGHE*01 (CH3)        GGG GAG ACC TAC CAG TGC AGG GTG ACC CAC CCC CAC ... ... CTG CCC AGG GCC CTC GTG


                                119 120 121 122 123 124 125
                                 R   S   T   T   K   T   S
  M15398  ,IGHE*01 (CH3)        CGG TCC ACG ACC AAG ACC AGC G




                                                    1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                     G   P   R   A   A   P   E   V   Y   A   F   A   T   P   E
  M15398  ,IGHE*01 (CH4)                             GC CCG CGT GCT GCC CCG GAA GTC TAT GCG TTT GCG ACG CCG GAG

                                                ___AB_______                                            ________
                                               15.1    15.3                                                    
                                 12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                 G   P   G   S               R   D   K   R   T   L   A   C   L   I   Q   N   F
  M15398  ,IGHE*01 (CH4)        GGG CCG GGG AGC ... ... ... CGG GAC AAG CGC ACC CTC GCC TGC CTG ATC CAG AAC TTC

                                _________BC_____________________                            ___________CD_______
                                                                                           45.1    45.3    45.5
                                 29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                 M   P           E   D   I   S   V   Q   W   L   H   N   E   V   Q   L   P   D
  M15398  ,IGHE*01 (CH4)        ATG CCT ... ... GAG GAC ATC TCG GTG CAG TGG CTG CAC AAC GAG GTG CAG CTC CCG GAC

                                ________                                _________________________DE_____________
                                   45.7                                84.1    84.3    84.5    84.7    85.6    
                               45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                 A       R   H   S   T   T   Q   P   H   K   T   K   G
  M15398  ,IGHE*01 (CH4)        GCC ... CGG CAC AGC ACA ACG CAG CCC CAC AAG ACC AAG GGC ... ... ... ... ... ...

                                ________________                                                _EF_____
                               85.4    85.2                                                    96.1    
                                   85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                 S   G   F   F   V   F   S   R   L   E   V   T   R   A   E   W           E   Q
  M15398  ,IGHE*01 (CH4)        TCC GGC TTC TTC GTC TTC AGC CGC CTG GAG GTG ACC AGG GCC GAA TGG ... ... GAG CAG

                                                        _______________________FG___________________________
                                                                                                           
                                 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                 K   D   E   F   I   C   R   A   V   H   E   A   A   S   P   S   Q   T   V   Q
  M15398  ,IGHE*01 (CH4)        AAA GAT GAG TTC ATC TGC CGT GCA GTC CAT GAG GCA GCG AGC CCC TCA CAG ACC GTC CAG

                                                                        CHS____
                                                                               
                                119 120 121 122 123 124 125 126 127 128 129 130
                                 R   T   V   S   V   N   P               G   K   *
  M15398  ,IGHE*01 (CH4)        CGA ACG GTG TCT GTA AAT CCC ... ... ... GGT AAA



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 12/11/2002
Author: Nathalie Bosc